NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,149.0 |
| Mean read quality |
9.5 |
| Median read length |
8,284.0 |
| Median read quality |
10.3 |
| Number of reads |
572,294.0 |
| Read length N50 |
8,876.0 |
| STDEV read length |
2,941.4 |
| Total bases |
4,663,613,604.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
572294 (100.0%) 4663.6Mb |
| >Q7 |
572294 (100.0%) 4663.6Mb |
| >Q10 |
331752 (58.0%) 2701.2Mb |
| >Q12 |
72377 (12.6%) 583.3Mb |
| >Q15 |
16 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (3551) |
| 2 |
15.7 (2814) |
| 3 |
15.4 (2718) |
| 4 |
15.4 (6726) |
| 5 |
15.3 (9961) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
88689 (10.2) |
| 2 |
48633 (9.0) |
| 3 |
45718 (11.4) |
| 4 |
44827 (9.9) |
| 5 |
43774 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot