NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,133.5 |
| Mean read quality |
9.6 |
| Median read length |
8,101.0 |
| Median read quality |
10.4 |
| Number of reads |
564,480.0 |
| Read length N50 |
9,696.0 |
| STDEV read length |
4,122.0 |
| Total bases |
4,591,173,423.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
564480 (100.0%) 4591.2Mb |
| >Q7 |
564480 (100.0%) 4591.2Mb |
| >Q10 |
332608 (58.9%) 2706.8Mb |
| >Q12 |
78772 (14.0%) 623.3Mb |
| >Q15 |
26 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (15221) |
| 2 |
15.6 (3183) |
| 3 |
15.6 (15647) |
| 4 |
15.5 (8493) |
| 5 |
15.5 (2082) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56818 (9.4) |
| 2 |
51684 (8.6) |
| 3 |
51514 (8.9) |
| 4 |
50420 (10.7) |
| 5 |
49789 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot