NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,859.0 |
| Mean read quality |
9.6 |
| Median read length |
6,115.0 |
| Median read quality |
10.4 |
| Number of reads |
843,610.0 |
| Read length N50 |
8,669.0 |
| STDEV read length |
3,902.8 |
| Total bases |
5,786,300,984.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
843610 (100.0%) 5786.3Mb |
| >Q7 |
843608 (100.0%) 5786.3Mb |
| >Q10 |
499396 (59.2%) 3446.4Mb |
| >Q12 |
123213 (14.6%) 838.3Mb |
| >Q15 |
122 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3513) |
| 2 |
16.5 (5888) |
| 3 |
16.2 (8925) |
| 4 |
16.1 (3022) |
| 5 |
16.0 (2112) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49256 (8.8) |
| 2 |
44571 (7.8) |
| 3 |
42607 (8.3) |
| 4 |
42190 (8.7) |
| 5 |
40566 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot