NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,944.3 |
| Mean read quality |
9.6 |
| Median read length |
8,400.0 |
| Median read quality |
10.6 |
| Number of reads |
602,924.0 |
| Read length N50 |
9,808.0 |
| STDEV read length |
4,095.5 |
| Total bases |
5,392,749,966.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
602757 (100.0%) 5391.4Mb |
| >Q7 |
584666 (97.0%) 5234.0Mb |
| >Q10 |
378032 (62.7%) 3361.0Mb |
| >Q12 |
109707 (18.2%) 960.9Mb |
| >Q15 |
168 (0.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (15384) |
| 2 |
16.2 (2795) |
| 3 |
16.1 (9116) |
| 4 |
16.0 (2712) |
| 5 |
15.9 (6600) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
226865 (10.3) |
| 2 |
127781 (10.2) |
| 3 |
97432 (9.5) |
| 4 |
95420 (9.7) |
| 5 |
79175 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot