NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,413.3 |
| Mean read quality |
11.4 |
| Median read length |
4,351.0 |
| Median read quality |
13.0 |
| Number of reads |
654,718.0 |
| Read length N50 |
6,815.0 |
| STDEV read length |
3,307.0 |
| Total bases |
3,544,197,392.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
654718 (100.0%) 3544.2Mb |
| >Q7 |
654718 (100.0%) 3544.2Mb |
| >Q10 |
524685 (80.1%) 2869.2Mb |
| >Q12 |
406131 (62.0%) 2240.7Mb |
| >Q15 |
138676 (21.2%) 749.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.0 (1998) |
| 2 |
21.9 (2389) |
| 3 |
21.9 (4227) |
| 4 |
21.5 (2262) |
| 5 |
21.5 (3355) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50966 (9.3) |
| 2 |
49267 (8.5) |
| 3 |
45663 (7.7) |
| 4 |
44325 (12.9) |
| 5 |
43642 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot