NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,488.2 |
| Mean read quality |
9.7 |
| Median read length |
8,532.0 |
| Median read quality |
10.6 |
| Number of reads |
582,656.0 |
| Read length N50 |
10,698.0 |
| STDEV read length |
4,624.0 |
| Total bases |
5,528,364,436.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
582656 (100.0%) 5528.4Mb |
| >Q7 |
582656 (100.0%) 5528.4Mb |
| >Q10 |
371920 (63.8%) 3517.7Mb |
| >Q12 |
105369 (18.1%) 983.2Mb |
| >Q15 |
106 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2916) |
| 2 |
16.1 (2087) |
| 3 |
16.0 (7325) |
| 4 |
16.0 (5935) |
| 5 |
15.9 (7131) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70384 (12.7) |
| 2 |
56766 (8.8) |
| 3 |
54282 (8.6) |
| 4 |
54146 (8.2) |
| 5 |
53849 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot