NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,122.7 |
| Mean read quality |
9.6 |
| Median read length |
7,639.0 |
| Median read quality |
10.4 |
| Number of reads |
839,878.0 |
| Read length N50 |
9,767.0 |
| STDEV read length |
4,137.9 |
| Total bases |
6,822,067,454.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
839878 (100.0%) 6822.1Mb |
| >Q7 |
839878 (100.0%) 6822.1Mb |
| >Q10 |
497719 (59.3%) 4031.8Mb |
| >Q12 |
131123 (15.6%) 1041.4Mb |
| >Q15 |
225 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (6863) |
| 2 |
16.1 (8624) |
| 3 |
16.0 (2737) |
| 4 |
16.0 (3075) |
| 5 |
15.9 (6728) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61114 (7.2) |
| 2 |
61000 (8.3) |
| 3 |
53774 (11.1) |
| 4 |
50655 (8.2) |
| 5 |
49680 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot