NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,561.7 |
| Mean read quality |
9.6 |
| Median read length |
6,867.0 |
| Median read quality |
10.5 |
| Number of reads |
854,155.0 |
| Read length N50 |
8,302.0 |
| STDEV read length |
3,555.3 |
| Total bases |
6,458,886,589.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
854155 (100.0%) 6458.9Mb |
| >Q7 |
854155 (100.0%) 6458.9Mb |
| >Q10 |
524464 (61.4%) 3916.3Mb |
| >Q12 |
139154 (16.3%) 1022.4Mb |
| >Q15 |
83 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (6772) |
| 2 |
15.9 (3202) |
| 3 |
15.8 (8017) |
| 4 |
15.7 (2283) |
| 5 |
15.7 (6125) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71823 (7.9) |
| 2 |
61337 (8.3) |
| 3 |
54303 (8.5) |
| 4 |
54198 (8.9) |
| 5 |
48527 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot