NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,247.0 |
| Mean read quality |
9.7 |
| Median read length |
8,329.0 |
| Median read quality |
10.6 |
| Number of reads |
565,961.0 |
| Read length N50 |
10,334.0 |
| STDEV read length |
4,412.6 |
| Total bases |
5,233,446,557.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
565961 (100.0%) 5233.4Mb |
| >Q7 |
565961 (100.0%) 5233.4Mb |
| >Q10 |
353891 (62.5%) 3262.5Mb |
| >Q12 |
95729 (16.9%) 869.1Mb |
| >Q15 |
74 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2849) |
| 2 |
15.8 (7611) |
| 3 |
15.8 (2569) |
| 4 |
15.7 (4570) |
| 5 |
15.7 (5873) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
77452 (7.7) |
| 2 |
68015 (9.2) |
| 3 |
55863 (7.8) |
| 4 |
54320 (8.8) |
| 5 |
52603 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot