NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,367.0 |
| Mean read quality |
9.5 |
| Median read length |
5,048.5 |
| Median read quality |
10.3 |
| Number of reads |
593,704.0 |
| Read length N50 |
8,324.0 |
| STDEV read length |
4,239.8 |
| Total bases |
3,780,135,090.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
593704 (100.0%) 3780.1Mb |
| >Q7 |
593704 (100.0%) 3780.1Mb |
| >Q10 |
338355 (57.0%) 2117.9Mb |
| >Q12 |
83655 (14.1%) 501.0Mb |
| >Q15 |
45 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2422) |
| 2 |
16.1 (3154) |
| 3 |
15.8 (3501) |
| 4 |
15.8 (2850) |
| 5 |
15.7 (2481) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67751 (12.4) |
| 2 |
60479 (11.0) |
| 3 |
58311 (9.1) |
| 4 |
57556 (9.6) |
| 5 |
56598 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot