NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,761.0 |
| Mean read quality |
9.8 |
| Median read length |
7,372.0 |
| Median read quality |
10.7 |
| Number of reads |
999,369.0 |
| Read length N50 |
8,076.0 |
| STDEV read length |
2,655.2 |
| Total bases |
7,756,054,095.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
999369 (100.0%) 7756.1Mb |
| >Q7 |
999367 (100.0%) 7756.0Mb |
| >Q10 |
646428 (64.7%) 5012.8Mb |
| >Q12 |
216310 (21.6%) 1672.7Mb |
| >Q15 |
543 (0.1%) 3.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (6693) |
| 2 |
16.6 (6825) |
| 3 |
16.6 (6205) |
| 4 |
16.5 (6831) |
| 5 |
16.3 (6249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51903 (11.6) |
| 2 |
51047 (11.3) |
| 3 |
48984 (11.3) |
| 4 |
42812 (8.9) |
| 5 |
42395 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot