NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,072.9 |
| Mean read quality |
9.8 |
| Median read length |
7,677.0 |
| Median read quality |
10.7 |
| Number of reads |
896,790.0 |
| Read length N50 |
8,471.0 |
| STDEV read length |
2,887.6 |
| Total bases |
7,239,707,451.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
896790 (100.0%) 7239.7Mb |
| >Q7 |
896790 (100.0%) 7239.7Mb |
| >Q10 |
578906 (64.6%) 4669.1Mb |
| >Q12 |
197088 (22.0%) 1583.9Mb |
| >Q15 |
488 (0.1%) 3.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (10539) |
| 2 |
16.4 (6976) |
| 3 |
16.3 (7358) |
| 4 |
16.3 (2520) |
| 5 |
16.3 (3058) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56086 (8.4) |
| 2 |
53341 (9.4) |
| 3 |
50791 (7.8) |
| 4 |
50176 (8.0) |
| 5 |
48620 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot