NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,496.4 |
| Mean read quality |
9.6 |
| Median read length |
7,225.0 |
| Median read quality |
10.5 |
| Number of reads |
745,024.0 |
| Read length N50 |
8,338.0 |
| STDEV read length |
3,173.5 |
| Total bases |
5,585,006,056.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
745024 (100.0%) 5585.0Mb |
| >Q7 |
745024 (100.0%) 5585.0Mb |
| >Q10 |
446190 (59.9%) 3352.1Mb |
| >Q12 |
138700 (18.6%) 1032.3Mb |
| >Q15 |
195 (0.0%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (7359) |
| 2 |
16.4 (11646) |
| 3 |
16.4 (7694) |
| 4 |
16.3 (6900) |
| 5 |
16.0 (6957) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56092 (7.8) |
| 2 |
47957 (9.4) |
| 3 |
39778 (10.4) |
| 4 |
39553 (8.7) |
| 5 |
39540 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot