NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,754.2 |
| Mean read quality |
9.7 |
| Median read length |
7,466.0 |
| Median read quality |
10.6 |
| Number of reads |
661,227.0 |
| Read length N50 |
8,542.0 |
| STDEV read length |
3,152.8 |
| Total bases |
5,127,282,374.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
661227 (100.0%) 5127.3Mb |
| >Q7 |
661227 (100.0%) 5127.3Mb |
| >Q10 |
405114 (61.3%) 3136.1Mb |
| >Q12 |
129689 (19.6%) 993.5Mb |
| >Q15 |
220 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2994) |
| 2 |
16.3 (2251) |
| 3 |
16.2 (18623) |
| 4 |
16.1 (3656) |
| 5 |
16.1 (3848) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42925 (10.6) |
| 2 |
40982 (13.9) |
| 3 |
40481 (9.8) |
| 4 |
40186 (10.6) |
| 5 |
39788 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot