NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,071.9 |
| Mean read quality |
9.8 |
| Median read length |
7,783.0 |
| Median read quality |
10.7 |
| Number of reads |
722,155.0 |
| Read length N50 |
8,627.0 |
| STDEV read length |
2,906.8 |
| Total bases |
5,829,150,890.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
722155 (100.0%) 5829.2Mb |
| >Q7 |
722155 (100.0%) 5829.2Mb |
| >Q10 |
456340 (63.2%) 3692.0Mb |
| >Q12 |
158289 (21.9%) 1272.3Mb |
| >Q15 |
268 (0.0%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (8249) |
| 2 |
16.4 (2886) |
| 3 |
16.4 (9532) |
| 4 |
16.3 (11175) |
| 5 |
16.1 (7015) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50657 (9.0) |
| 2 |
42580 (8.6) |
| 3 |
42085 (13.6) |
| 4 |
41522 (7.3) |
| 5 |
41320 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot