NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,271.5 |
| Mean read quality |
9.8 |
| Median read length |
10,366.0 |
| Median read quality |
10.7 |
| Number of reads |
431,314.0 |
| Read length N50 |
11,322.0 |
| STDEV read length |
3,793.0 |
| Total bases |
4,430,232,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
431314 (100.0%) 4430.2Mb |
| >Q7 |
431314 (100.0%) 4430.2Mb |
| >Q10 |
275850 (64.0%) 2826.8Mb |
| >Q12 |
94869 (22.0%) 966.3Mb |
| >Q15 |
109 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (5196) |
| 2 |
16.1 (8692) |
| 3 |
16.1 (15137) |
| 4 |
16.0 (2536) |
| 5 |
16.0 (8808) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61079 (9.4) |
| 2 |
60290 (9.0) |
| 3 |
54968 (8.1) |
| 4 |
52393 (7.3) |
| 5 |
47197 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot