NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,340.7 |
| Mean read quality |
11.6 |
| Median read length |
5,924.0 |
| Median read quality |
13.1 |
| Number of reads |
753,346.0 |
| Read length N50 |
7,635.0 |
| STDEV read length |
3,251.0 |
| Total bases |
4,776,730,094.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
753346 (100.0%) 4776.7Mb |
| >Q7 |
753346 (100.0%) 4776.7Mb |
| >Q10 |
640656 (85.0%) 4055.9Mb |
| >Q12 |
495235 (65.7%) 3148.6Mb |
| >Q15 |
146564 (19.5%) 913.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.5 (2080) |
| 2 |
21.5 (3280) |
| 3 |
21.5 (2232) |
| 4 |
21.0 (2333) |
| 5 |
21.0 (3179) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
267880 (9.1) |
| 2 |
56538 (8.2) |
| 3 |
54634 (8.0) |
| 4 |
44921 (9.5) |
| 5 |
42459 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot