NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,318.4 |
| Mean read quality |
9.6 |
| Median read length |
5,893.0 |
| Median read quality |
10.5 |
| Number of reads |
700,101.0 |
| Read length N50 |
7,476.0 |
| STDEV read length |
3,137.6 |
| Total bases |
4,423,520,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
700101 (100.0%) 4423.5Mb |
| >Q7 |
700098 (100.0%) 4423.5Mb |
| >Q10 |
420167 (60.0%) 2634.7Mb |
| >Q12 |
114432 (16.3%) 691.9Mb |
| >Q15 |
123 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (2374) |
| 2 |
16.5 (2006) |
| 3 |
16.2 (4647) |
| 4 |
16.2 (3790) |
| 5 |
16.2 (10929) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50805 (10.7) |
| 2 |
48829 (8.3) |
| 3 |
42530 (9.1) |
| 4 |
42289 (9.4) |
| 5 |
41364 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot