NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,915.7 |
| Mean read quality |
9.5 |
| Median read length |
7,942.5 |
| Median read quality |
10.3 |
| Number of reads |
555,570.0 |
| Read length N50 |
8,727.0 |
| STDEV read length |
3,088.5 |
| Total bases |
4,397,708,654.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
555570 (100.0%) 4397.7Mb |
| >Q7 |
555570 (100.0%) 4397.7Mb |
| >Q10 |
315500 (56.8%) 2492.9Mb |
| >Q12 |
65762 (11.8%) 507.6Mb |
| >Q15 |
37 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (8130) |
| 2 |
16.3 (6035) |
| 3 |
15.9 (2093) |
| 4 |
15.8 (7665) |
| 5 |
15.7 (5480) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52420 (10.5) |
| 2 |
46216 (8.6) |
| 3 |
43249 (10.6) |
| 4 |
43102 (7.9) |
| 5 |
43021 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot