NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,005.8 |
| Mean read quality |
9.8 |
| Median read length |
9,833.5 |
| Median read quality |
10.7 |
| Number of reads |
421,884.0 |
| Read length N50 |
12,093.0 |
| STDEV read length |
5,108.1 |
| Total bases |
4,221,299,156.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
421884 (100.0%) 4221.3Mb |
| >Q7 |
421882 (100.0%) 4221.3Mb |
| >Q10 |
271815 (64.4%) 2701.1Mb |
| >Q12 |
94395 (22.4%) 917.2Mb |
| >Q15 |
164 (0.0%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2239) |
| 2 |
16.0 (12942) |
| 3 |
15.9 (10132) |
| 4 |
15.9 (4241) |
| 5 |
15.9 (8088) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67446 (7.8) |
| 2 |
65864 (8.2) |
| 3 |
62331 (10.4) |
| 4 |
56726 (8.2) |
| 5 |
54959 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot