NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,725.9 |
| Mean read quality |
9.9 |
| Median read length |
8,207.0 |
| Median read quality |
10.8 |
| Number of reads |
578,857.0 |
| Read length N50 |
9,796.0 |
| STDEV read length |
4,081.4 |
| Total bases |
5,051,043,479.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
578857 (100.0%) 5051.0Mb |
| >Q7 |
578857 (100.0%) 5051.0Mb |
| >Q10 |
397243 (68.6%) 3448.4Mb |
| >Q12 |
116600 (20.1%) 999.4Mb |
| >Q15 |
70 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (9346) |
| 2 |
16.3 (6337) |
| 3 |
16.0 (2646) |
| 4 |
16.0 (3409) |
| 5 |
15.9 (6531) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56722 (8.5) |
| 2 |
49044 (7.8) |
| 3 |
48144 (8.8) |
| 4 |
46764 (8.1) |
| 5 |
45181 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot