NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,951.8 |
| Mean read quality |
10.8 |
| Median read length |
5,132.0 |
| Median read quality |
12.1 |
| Number of reads |
225,472.0 |
| Read length N50 |
7,392.0 |
| STDEV read length |
3,457.7 |
| Total bases |
1,341,955,855.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
225472 (100.0%) 1342.0Mb |
| >Q7 |
225472 (100.0%) 1342.0Mb |
| >Q10 |
170107 (75.4%) 1008.2Mb |
| >Q12 |
114897 (51.0%) 679.4Mb |
| >Q15 |
30703 (13.6%) 177.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (4977) |
| 2 |
20.7 (5504) |
| 3 |
20.5 (12649) |
| 4 |
20.4 (2084) |
| 5 |
20.2 (2443) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44885 (9.0) |
| 2 |
41208 (9.4) |
| 3 |
39852 (8.8) |
| 4 |
39326 (12.9) |
| 5 |
38344 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot