NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,583.5 |
| Mean read quality |
11.6 |
| Median read length |
6,236.0 |
| Median read quality |
12.8 |
| Number of reads |
958,745.0 |
| Read length N50 |
7,663.0 |
| STDEV read length |
3,093.7 |
| Total bases |
6,311,862,604.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
958745 (100.0%) 6311.9Mb |
| >Q7 |
958745 (100.0%) 6311.9Mb |
| >Q10 |
831101 (86.7%) 5466.9Mb |
| >Q12 |
615729 (64.2%) 4058.6Mb |
| >Q15 |
120379 (12.6%) 761.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (3744) |
| 2 |
20.1 (3894) |
| 3 |
20.0 (3409) |
| 4 |
20.0 (5197) |
| 5 |
19.9 (5623) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
136690 (7.8) |
| 2 |
49660 (14.5) |
| 3 |
46657 (7.9) |
| 4 |
43957 (7.7) |
| 5 |
41997 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot