NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
11,046.0 |
| Mean read quality |
9.9 |
| Median read length |
10,870.0 |
| Median read quality |
10.8 |
| Number of reads |
446,888.0 |
| Read length N50 |
12,216.0 |
| STDEV read length |
4,520.3 |
| Total bases |
4,936,345,619.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
446888 (100.0%) 4936.3Mb |
| >Q7 |
446888 (100.0%) 4936.3Mb |
| >Q10 |
306402 (68.6%) 3384.5Mb |
| >Q12 |
84156 (18.8%) 914.5Mb |
| >Q15 |
30 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (3120) |
| 2 |
15.7 (2448) |
| 3 |
15.6 (4182) |
| 4 |
15.6 (12397) |
| 5 |
15.6 (11466) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63215 (8.9) |
| 2 |
59600 (8.0) |
| 3 |
56001 (8.6) |
| 4 |
55692 (8.5) |
| 5 |
54404 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot