NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,052.6 |
| Mean read quality |
11.5 |
| Median read length |
4,913.0 |
| Median read quality |
12.9 |
| Number of reads |
811,663.0 |
| Read length N50 |
7,851.0 |
| STDEV read length |
3,913.7 |
| Total bases |
4,912,668,530.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
811663 (100.0%) 4912.7Mb |
| >Q7 |
811663 (100.0%) 4912.7Mb |
| >Q10 |
677003 (83.4%) 4143.7Mb |
| >Q12 |
513714 (63.3%) 3168.7Mb |
| >Q15 |
140716 (17.3%) 851.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (8247) |
| 2 |
20.9 (3114) |
| 3 |
20.9 (5056) |
| 4 |
20.8 (3175) |
| 5 |
20.8 (4249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
177652 (8.6) |
| 2 |
161202 (8.0) |
| 3 |
59504 (7.6) |
| 4 |
57492 (8.3) |
| 5 |
55811 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot