NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,811.1 |
| Mean read quality |
11.3 |
| Median read length |
4,422.0 |
| Median read quality |
12.8 |
| Number of reads |
809,491.0 |
| Read length N50 |
7,468.0 |
| STDEV read length |
4,026.3 |
| Total bases |
4,703,995,018.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
809491 (100.0%) 4704.0Mb |
| >Q7 |
809491 (100.0%) 4704.0Mb |
| >Q10 |
650260 (80.3%) 3723.4Mb |
| >Q12 |
489921 (60.5%) 2808.8Mb |
| >Q15 |
144014 (17.8%) 804.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.5 (5988) |
| 2 |
21.9 (2365) |
| 3 |
21.5 (2319) |
| 4 |
21.4 (3147) |
| 5 |
21.1 (2407) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
140702 (7.7) |
| 2 |
90822 (7.4) |
| 3 |
82202 (11.7) |
| 4 |
72618 (9.2) |
| 5 |
63109 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot