NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,103.1 |
| Mean read quality |
9.7 |
| Median read length |
8,597.0 |
| Median read quality |
10.6 |
| Number of reads |
506,442.0 |
| Read length N50 |
10,752.0 |
| STDEV read length |
4,773.5 |
| Total bases |
4,610,172,947.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
506442 (100.0%) 4610.2Mb |
| >Q7 |
506442 (100.0%) 4610.2Mb |
| >Q10 |
322459 (63.7%) 2919.8Mb |
| >Q12 |
78610 (15.5%) 683.6Mb |
| >Q15 |
29 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (2312) |
| 2 |
15.7 (4428) |
| 3 |
15.6 (7588) |
| 4 |
15.6 (7358) |
| 5 |
15.6 (6417) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60893 (8.6) |
| 2 |
58290 (7.2) |
| 3 |
57510 (8.3) |
| 4 |
52370 (8.7) |
| 5 |
51452 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot