NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,969.1 |
| Mean read quality |
11.1 |
| Median read length |
3,838.0 |
| Median read quality |
12.3 |
| Number of reads |
582,734.0 |
| Read length N50 |
6,222.0 |
| STDEV read length |
3,104.3 |
| Total bases |
2,895,690,688.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
582734 (100.0%) 2895.7Mb |
| >Q7 |
582734 (100.0%) 2895.7Mb |
| >Q10 |
456362 (78.3%) 2273.7Mb |
| >Q12 |
319577 (54.8%) 1585.4Mb |
| >Q15 |
94088 (16.1%) 449.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (2788) |
| 2 |
20.8 (3495) |
| 3 |
20.6 (2259) |
| 4 |
20.6 (2553) |
| 5 |
20.5 (2819) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45630 (8.3) |
| 2 |
38284 (8.9) |
| 3 |
37546 (10.1) |
| 4 |
37295 (8.5) |
| 5 |
36752 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot