NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,254.7 |
| Mean read quality |
9.4 |
| Median read length |
7,008.0 |
| Median read quality |
10.2 |
| Number of reads |
663,221.0 |
| Read length N50 |
8,433.0 |
| STDEV read length |
3,364.3 |
| Total bases |
4,811,484,895.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
663221 (100.0%) 4811.5Mb |
| >Q7 |
663221 (100.0%) 4811.5Mb |
| >Q10 |
364425 (54.9%) 2638.1Mb |
| >Q12 |
75171 (11.3%) 525.1Mb |
| >Q15 |
23 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2022) |
| 2 |
15.5 (5537) |
| 3 |
15.5 (2277) |
| 4 |
15.4 (9350) |
| 5 |
15.4 (2211) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51051 (8.3) |
| 2 |
48166 (11.6) |
| 3 |
46102 (9.9) |
| 4 |
45766 (10.3) |
| 5 |
44987 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot