NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,570.8 |
| Mean read quality |
9.5 |
| Median read length |
6,828.0 |
| Median read quality |
10.3 |
| Number of reads |
971,367.0 |
| Read length N50 |
9,448.0 |
| STDEV read length |
4,300.6 |
| Total bases |
7,353,985,350.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
971367 (100.0%) 7354.0Mb |
| >Q7 |
971364 (100.0%) 7354.0Mb |
| >Q10 |
545440 (56.2%) 4089.7Mb |
| >Q12 |
122642 (12.6%) 871.7Mb |
| >Q15 |
96 (0.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (8524) |
| 2 |
16.6 (5572) |
| 3 |
16.5 (2112) |
| 4 |
16.3 (5973) |
| 5 |
16.1 (3436) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
64464 (8.6) |
| 2 |
56116 (7.2) |
| 3 |
54290 (9.4) |
| 4 |
53441 (10.2) |
| 5 |
52809 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot