NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,681.4 |
| Mean read quality |
9.3 |
| Median read length |
6,376.0 |
| Median read quality |
10.1 |
| Number of reads |
669,765.0 |
| Read length N50 |
8,016.0 |
| STDEV read length |
3,355.8 |
| Total bases |
4,474,963,899.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
669765 (100.0%) 4475.0Mb |
| >Q7 |
669764 (100.0%) 4475.0Mb |
| >Q10 |
353694 (52.8%) 2357.6Mb |
| >Q12 |
74176 (11.1%) 475.2Mb |
| >Q15 |
37 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (2831) |
| 2 |
15.6 (7437) |
| 3 |
15.6 (11581) |
| 4 |
15.5 (11031) |
| 5 |
15.4 (2722) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56014 (8.5) |
| 2 |
47563 (8.2) |
| 3 |
41868 (11.2) |
| 4 |
39836 (8.3) |
| 5 |
39690 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot