NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,294.0 |
| Mean read quality |
11.7 |
| Median read length |
6,536.0 |
| Median read quality |
13.2 |
| Number of reads |
912,325.0 |
| Read length N50 |
9,253.0 |
| STDEV read length |
4,255.8 |
| Total bases |
6,654,520,078.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
912325 (100.0%) 6654.5Mb |
| >Q7 |
912325 (100.0%) 6654.5Mb |
| >Q10 |
782199 (85.7%) 5755.9Mb |
| >Q12 |
606856 (66.5%) 4499.9Mb |
| >Q15 |
182601 (20.0%) 1323.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (2246) |
| 2 |
20.9 (3649) |
| 3 |
20.5 (2801) |
| 4 |
20.5 (7841) |
| 5 |
20.4 (5058) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54671 (8.6) |
| 2 |
53433 (8.8) |
| 3 |
53096 (8.7) |
| 4 |
51498 (8.4) |
| 5 |
51213 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot