NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,632.0 |
| Mean read quality |
11.4 |
| Median read length |
4,837.0 |
| Median read quality |
12.7 |
| Number of reads |
561,227.0 |
| Read length N50 |
6,984.0 |
| STDEV read length |
3,224.0 |
| Total bases |
3,160,811,221.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
561227 (100.0%) 3160.8Mb |
| >Q7 |
561227 (100.0%) 3160.8Mb |
| >Q10 |
465150 (82.9%) 2598.0Mb |
| >Q12 |
337659 (60.2%) 1881.4Mb |
| >Q15 |
87702 (15.6%) 464.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (2658) |
| 2 |
20.7 (3458) |
| 3 |
20.3 (4587) |
| 4 |
20.3 (2309) |
| 5 |
20.2 (4384) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49515 (7.6) |
| 2 |
42236 (8.9) |
| 3 |
40188 (10.3) |
| 4 |
38493 (8.8) |
| 5 |
37959 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot