NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,386.1 |
| Mean read quality |
11.4 |
| Median read length |
4,189.0 |
| Median read quality |
12.8 |
| Number of reads |
472,760.0 |
| Read length N50 |
6,862.0 |
| STDEV read length |
3,459.3 |
| Total bases |
2,546,355,408.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
472760 (100.0%) 2546.4Mb |
| >Q7 |
472760 (100.0%) 2546.4Mb |
| >Q10 |
397392 (84.1%) 2142.3Mb |
| >Q12 |
290542 (61.5%) 1563.4Mb |
| >Q15 |
76027 (16.1%) 387.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (2034) |
| 2 |
21.1 (2046) |
| 3 |
20.6 (2008) |
| 4 |
20.4 (3118) |
| 5 |
20.3 (5016) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42229 (9.0) |
| 2 |
41361 (11.9) |
| 3 |
40559 (14.4) |
| 4 |
40089 (10.3) |
| 5 |
39731 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot