NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,561.4 |
| Mean read quality |
9.5 |
| Median read length |
6,024.0 |
| Median read quality |
10.3 |
| Number of reads |
787,282.0 |
| Read length N50 |
7,897.0 |
| STDEV read length |
3,398.7 |
| Total bases |
5,165,691,848.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
787282 (100.0%) 5165.7Mb |
| >Q7 |
787282 (100.0%) 5165.7Mb |
| >Q10 |
448249 (56.9%) 2930.9Mb |
| >Q12 |
110282 (14.0%) 701.8Mb |
| >Q15 |
131 (0.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (1996) |
| 2 |
16.3 (2099) |
| 3 |
16.3 (2853) |
| 4 |
16.2 (3770) |
| 5 |
16.1 (2024) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61993 (7.3) |
| 2 |
52357 (7.5) |
| 3 |
48638 (10.3) |
| 4 |
47945 (8.4) |
| 5 |
47774 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot