NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,909.0 |
| Mean read quality |
9.6 |
| Median read length |
8,029.0 |
| Median read quality |
10.5 |
| Number of reads |
591,162.0 |
| Read length N50 |
8,821.0 |
| STDEV read length |
3,173.8 |
| Total bases |
4,675,480,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
591162 (100.0%) 4675.5Mb |
| >Q7 |
591161 (100.0%) 4675.5Mb |
| >Q10 |
359398 (60.8%) 2838.5Mb |
| >Q12 |
78956 (13.4%) 606.4Mb |
| >Q15 |
62 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3155) |
| 2 |
16.3 (7485) |
| 3 |
15.8 (4317) |
| 4 |
15.8 (11653) |
| 5 |
15.8 (2587) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
64405 (10.2) |
| 2 |
45701 (8.2) |
| 3 |
44584 (10.8) |
| 4 |
44520 (8.1) |
| 5 |
43834 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot