NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,672.0 |
| Mean read quality |
9.5 |
| Median read length |
8,450.0 |
| Median read quality |
10.3 |
| Number of reads |
488,731.0 |
| Read length N50 |
9,646.0 |
| STDEV read length |
3,713.3 |
| Total bases |
4,238,275,199.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
488731 (100.0%) 4238.3Mb |
| >Q7 |
488730 (100.0%) 4238.3Mb |
| >Q10 |
275693 (56.4%) 2389.8Mb |
| >Q12 |
57174 (11.7%) 484.5Mb |
| >Q15 |
30 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (5857) |
| 2 |
15.7 (10555) |
| 3 |
15.7 (10348) |
| 4 |
15.6 (7257) |
| 5 |
15.5 (11650) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52050 (8.3) |
| 2 |
51265 (8.0) |
| 3 |
46451 (11.2) |
| 4 |
46233 (11.2) |
| 5 |
46168 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot