NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,256.3 |
| Mean read quality |
9.3 |
| Median read length |
7,486.0 |
| Median read quality |
10.1 |
| Number of reads |
561,407.0 |
| Read length N50 |
9,531.0 |
| STDEV read length |
4,208.6 |
| Total bases |
4,635,126,377.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
561407 (100.0%) 4635.1Mb |
| >Q7 |
561407 (100.0%) 4635.1Mb |
| >Q10 |
295207 (52.6%) 2419.7Mb |
| >Q12 |
34576 (6.2%) 271.8Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (6501) |
| 2 |
15.0 (6320) |
| 3 |
14.8 (5062) |
| 4 |
14.7 (7373) |
| 5 |
14.7 (3531) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62930 (8.5) |
| 2 |
53873 (10.2) |
| 3 |
53399 (8.0) |
| 4 |
53178 (11.0) |
| 5 |
51222 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot