NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,024.1 |
| Mean read quality |
9.6 |
| Median read length |
7,598.0 |
| Median read quality |
10.5 |
| Number of reads |
526,157.0 |
| Read length N50 |
9,421.0 |
| STDEV read length |
4,343.4 |
| Total bases |
4,221,943,529.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
526157 (100.0%) 4221.9Mb |
| >Q7 |
526157 (100.0%) 4221.9Mb |
| >Q10 |
326615 (62.1%) 2587.7Mb |
| >Q12 |
78124 (14.8%) 593.5Mb |
| >Q15 |
27 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2534) |
| 2 |
15.8 (3903) |
| 3 |
15.6 (2456) |
| 4 |
15.5 (4451) |
| 5 |
15.4 (7060) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54629 (12.6) |
| 2 |
52068 (8.2) |
| 3 |
51789 (9.1) |
| 4 |
51359 (11.4) |
| 5 |
51107 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot