NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,249.6 |
| Mean read quality |
9.7 |
| Median read length |
6,966.0 |
| Median read quality |
10.6 |
| Number of reads |
706,753.0 |
| Read length N50 |
8,376.0 |
| STDEV read length |
3,630.5 |
| Total bases |
5,123,653,167.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
706753 (100.0%) 5123.7Mb |
| >Q7 |
706751 (100.0%) 5123.6Mb |
| >Q10 |
447173 (63.3%) 3206.8Mb |
| >Q12 |
117213 (16.6%) 829.0Mb |
| >Q15 |
79 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (1999) |
| 2 |
15.9 (4989) |
| 3 |
15.7 (12890) |
| 4 |
15.7 (2421) |
| 5 |
15.6 (10509) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57912 (9.4) |
| 2 |
49107 (7.8) |
| 3 |
48631 (7.8) |
| 4 |
48191 (12.5) |
| 5 |
46195 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot