NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,439.8 |
| Mean read quality |
9.8 |
| Median read length |
7,328.0 |
| Median read quality |
10.7 |
| Number of reads |
713,934.0 |
| Read length N50 |
8,381.0 |
| STDEV read length |
3,383.3 |
| Total bases |
5,311,507,705.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
713934 (100.0%) 5311.5Mb |
| >Q7 |
713933 (100.0%) 5311.5Mb |
| >Q10 |
461694 (64.7%) 3412.0Mb |
| >Q12 |
122655 (17.2%) 885.2Mb |
| >Q15 |
85 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2076) |
| 2 |
15.8 (3665) |
| 3 |
15.6 (2628) |
| 4 |
15.6 (6569) |
| 5 |
15.5 (10734) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75936 (7.6) |
| 2 |
52473 (13.3) |
| 3 |
51609 (8.5) |
| 4 |
49376 (8.3) |
| 5 |
47738 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot