NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,356.2 |
| Mean read quality |
9.3 |
| Median read length |
5,723.0 |
| Median read quality |
10.1 |
| Number of reads |
343,733.0 |
| Read length N50 |
8,218.0 |
| STDEV read length |
3,711.5 |
| Total bases |
2,184,849,054.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
343733 (100.0%) 2184.8Mb |
| >Q7 |
343731 (100.0%) 2184.8Mb |
| >Q10 |
179877 (52.3%) 1150.2Mb |
| >Q12 |
39890 (11.6%) 246.3Mb |
| >Q15 |
17 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2004) |
| 2 |
15.5 (2095) |
| 3 |
15.3 (2901) |
| 4 |
15.3 (5895) |
| 5 |
15.3 (3478) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48421 (9.4) |
| 2 |
48079 (7.3) |
| 3 |
46672 (13.9) |
| 4 |
40407 (8.1) |
| 5 |
39509 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot