NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,882.2 |
| Mean read quality |
11.4 |
| Median read length |
5,086.0 |
| Median read quality |
12.7 |
| Number of reads |
653,930.0 |
| Read length N50 |
7,192.0 |
| STDEV read length |
3,364.5 |
| Total bases |
3,846,564,233.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
653930 (100.0%) 3846.6Mb |
| >Q7 |
653930 (100.0%) 3846.6Mb |
| >Q10 |
542831 (83.0%) 3166.4Mb |
| >Q12 |
395785 (60.5%) 2304.6Mb |
| >Q15 |
106860 (16.3%) 596.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (3701) |
| 2 |
20.7 (3094) |
| 3 |
20.5 (2316) |
| 4 |
20.5 (4455) |
| 5 |
20.4 (3792) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58735 (8.3) |
| 2 |
57029 (12.0) |
| 3 |
48479 (13.4) |
| 4 |
48071 (13.1) |
| 5 |
47765 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot