NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,740.9 |
| Mean read quality |
9.8 |
| Median read length |
4,726.0 |
| Median read quality |
10.7 |
| Number of reads |
876,908.0 |
| Read length N50 |
6,406.0 |
| STDEV read length |
3,199.1 |
| Total bases |
5,034,238,823.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
876908 (100.0%) 5034.2Mb |
| >Q7 |
876907 (100.0%) 5034.2Mb |
| >Q10 |
566642 (64.6%) 3221.2Mb |
| >Q12 |
151976 (17.3%) 835.8Mb |
| >Q15 |
76 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (4603) |
| 2 |
16.0 (3329) |
| 3 |
15.9 (2039) |
| 4 |
15.8 (4104) |
| 5 |
15.8 (4178) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57221 (9.5) |
| 2 |
52071 (9.2) |
| 3 |
49618 (8.3) |
| 4 |
46480 (7.5) |
| 5 |
45963 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot