NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,076.1 |
| Mean read quality |
9.9 |
| Median read length |
7,971.0 |
| Median read quality |
10.8 |
| Number of reads |
557,364.0 |
| Read length N50 |
9,324.0 |
| STDEV read length |
3,884.2 |
| Total bases |
4,501,330,458.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
557364 (100.0%) 4501.3Mb |
| >Q7 |
557364 (100.0%) 4501.3Mb |
| >Q10 |
374800 (67.2%) 3007.6Mb |
| >Q12 |
112858 (20.2%) 889.9Mb |
| >Q15 |
148 (0.0%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2390) |
| 2 |
16.1 (5967) |
| 3 |
16.1 (6042) |
| 4 |
16.1 (2242) |
| 5 |
16.0 (12193) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
77671 (8.2) |
| 2 |
65253 (10.1) |
| 3 |
53309 (11.5) |
| 4 |
51976 (9.0) |
| 5 |
49528 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot