NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,282.9 |
| Mean read quality |
10.9 |
| Median read length |
3,196.0 |
| Median read quality |
12.1 |
| Number of reads |
899,395.0 |
| Read length N50 |
4,801.0 |
| STDEV read length |
2,869.0 |
| Total bases |
3,852,053,981.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
899395 (100.0%) 3852.1Mb |
| >Q7 |
899395 (100.0%) 3852.1Mb |
| >Q10 |
689182 (76.6%) 2923.2Mb |
| >Q12 |
467525 (52.0%) 1971.0Mb |
| >Q15 |
125394 (13.9%) 507.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (5758) |
| 2 |
21.0 (2339) |
| 3 |
20.9 (5010) |
| 4 |
20.8 (2050) |
| 5 |
20.7 (2021) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47416 (8.8) |
| 2 |
45305 (9.4) |
| 3 |
43268 (9.0) |
| 4 |
42045 (8.2) |
| 5 |
41821 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot