NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,576.2 |
| Mean read quality |
9.6 |
| Median read length |
8,494.0 |
| Median read quality |
10.4 |
| Number of reads |
393,373.0 |
| Read length N50 |
9,832.0 |
| STDEV read length |
3,965.9 |
| Total bases |
3,373,638,844.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
393373 (100.0%) 3373.6Mb |
| >Q7 |
393373 (100.0%) 3373.6Mb |
| >Q10 |
238678 (60.7%) 2032.5Mb |
| >Q12 |
50871 (12.9%) 416.2Mb |
| >Q15 |
19 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (4150) |
| 2 |
16.2 (2424) |
| 3 |
15.5 (2772) |
| 4 |
15.3 (4809) |
| 5 |
15.2 (3651) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49403 (11.0) |
| 2 |
48340 (11.2) |
| 3 |
48257 (8.5) |
| 4 |
48168 (8.8) |
| 5 |
46454 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot