NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,700.7 |
| Mean read quality |
9.5 |
| Median read length |
9,200.0 |
| Median read quality |
10.5 |
| Number of reads |
504,033.0 |
| Read length N50 |
10,911.0 |
| STDEV read length |
4,615.0 |
| Total bases |
4,889,448,640.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
503892 (100.0%) 4888.1Mb |
| >Q7 |
487936 (96.8%) 4736.6Mb |
| >Q10 |
306137 (60.7%) 2960.1Mb |
| >Q12 |
76160 (15.1%) 720.1Mb |
| >Q15 |
55 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3029) |
| 2 |
16.1 (15307) |
| 3 |
15.9 (4269) |
| 4 |
15.6 (6535) |
| 5 |
15.6 (3010) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
124190 (10.3) |
| 2 |
82155 (8.4) |
| 3 |
78928 (10.2) |
| 4 |
62023 (9.6) |
| 5 |
61449 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot