NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,746.7 |
| Mean read quality |
9.2 |
| Median read length |
3,461.0 |
| Median read quality |
10.0 |
| Number of reads |
322,185.0 |
| Read length N50 |
5,980.0 |
| STDEV read length |
3,145.5 |
| Total bases |
1,529,330,440.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
322185 (100.0%) 1529.3Mb |
| >Q7 |
322184 (100.0%) 1529.3Mb |
| >Q10 |
161497 (50.1%) 772.9Mb |
| >Q12 |
33272 (10.3%) 154.7Mb |
| >Q15 |
25 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3963) |
| 2 |
15.6 (6086) |
| 3 |
15.6 (2020) |
| 4 |
15.5 (3049) |
| 5 |
15.5 (7560) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49440 (7.8) |
| 2 |
42319 (8.1) |
| 3 |
40738 (9.3) |
| 4 |
40517 (10.0) |
| 5 |
38524 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot