NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,324.8 |
| Mean read quality |
9.5 |
| Median read length |
7,503.0 |
| Median read quality |
10.4 |
| Number of reads |
554,030.0 |
| Read length N50 |
8,392.0 |
| STDEV read length |
3,063.7 |
| Total bases |
4,058,184,475.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
554030 (100.0%) 4058.2Mb |
| >Q7 |
554029 (100.0%) 4058.2Mb |
| >Q10 |
324431 (58.6%) 2368.6Mb |
| >Q12 |
66583 (12.0%) 473.6Mb |
| >Q15 |
22 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (3590) |
| 2 |
15.6 (2708) |
| 3 |
15.5 (5839) |
| 4 |
15.5 (3139) |
| 5 |
15.4 (7503) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54931 (7.8) |
| 2 |
49327 (12.1) |
| 3 |
47447 (11.6) |
| 4 |
44585 (7.8) |
| 5 |
42181 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot